Transcript: ENSMUST00000159544.5 Gt(ROSA)26Sor-203

Description

gene trap ROSA 26, Philippe Soriano [Source:MGI Symbol;Acc:MGI:104735]

Gene Synonyms

Gtrgeo26, Gtrosa26, R26, ROSA26, Thumpd3as1, beta geo

Location

Chromosome 6: 113,047,351-113,054,362 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 634 variant alleles and maps to 113 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000086429.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000332433.1	Gt(ROSA)26Sor-207	626	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000332448.1	Gt(ROSA)26Sor-222	1898	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242415.2	Gt(ROSA)26Sor-205	1845	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000332449.1	Gt(ROSA)26Sor-223	1738	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000332452.1	Gt(ROSA)26Sor-226	1610	No protein	-	lncRNA	-
ENSMUST00000332446.1	Gt(ROSA)26Sor-220	1378	No protein	-	lncRNA	-
ENSMUST00000332439.1	Gt(ROSA)26Sor-213	1321	No protein	-	lncRNA	-
ENSMUST00000124246.6	Gt(ROSA)26Sor-201	1303	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000167415.10	Gt(ROSA)26Sor-204	1302	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000332447.1	Gt(ROSA)26Sor-221	1285	No protein	-	lncRNA	-
ENSMUST00000159544.5	Gt(ROSA)26Sor-203	1274	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000242530.1	Gt(ROSA)26Sor-206	1264	No protein	-	lncRNA	-
ENSMUST00000332445.1	Gt(ROSA)26Sor-219	1256	No protein	-	lncRNA	-
ENSMUST00000332442.1	Gt(ROSA)26Sor-216	1239	No protein	-	lncRNA	-
ENSMUST00000332443.1	Gt(ROSA)26Sor-217	1234	No protein	-	lncRNA	-
ENSMUST00000133467.5	Gt(ROSA)26Sor-202	1217	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000332450.1	Gt(ROSA)26Sor-224	1190	No protein	-	lncRNA	-
ENSMUST00000332451.1	Gt(ROSA)26Sor-225	1179	No protein	-	lncRNA	-
ENSMUST00000332444.1	Gt(ROSA)26Sor-218	1171	No protein	-	lncRNA	-
ENSMUST00000332441.1	Gt(ROSA)26Sor-215	1161	No protein	-	lncRNA	-
ENSMUST00000332437.1	Gt(ROSA)26Sor-211	873	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000332453.1	Gt(ROSA)26Sor-227	784	No protein	-	lncRNA	-
ENSMUST00000332436.1	Gt(ROSA)26Sor-210	762	No protein	-	lncRNA	-
ENSMUST00000332438.1	Gt(ROSA)26Sor-212	727	No protein	-	lncRNA	-
ENSMUST00000332440.1	Gt(ROSA)26Sor-214	674	No protein	-	lncRNA	-
ENSMUST00000332435.1	Gt(ROSA)26Sor-209	667	No protein	-	lncRNA	-
ENSMUST00000332434.1	Gt(ROSA)26Sor-208	517	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,274 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000159544.5

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000159544.5 Gt(ROSA)26Sor-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000159544.5 Gt(ROSA)26Sor-203

Summary

About Us

Get help

Our sister sites

Follow us