Transcript: ENSMUST00000149025.2 Lincred1-201

Description

long intergenic non-protein coding RNA of erythroid differentiation 1 [Source:MGI Symbol;Acc:MGI:5428668]

Gene Synonyms

red1-dwarf, red1-giant

Location

Chromosome 2: 103,742,369-103,749,305 forward strand.

About this transcript

This transcript has 2 exons, is associated with 726 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000120246.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000307878.1	Lincred1-210	2293	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000307879.1	Lincred1-211	4624	No protein	-	lncRNA	-
ENSMUST00000307882.1	Lincred1-214	3770	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000149025.2	Lincred1-201	3716	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000250113.1	Lincred1-208	3542	No protein	-	lncRNA	-
ENSMUST00000307889.1	Lincred1-221	3314	No protein	-	lncRNA	-
ENSMUST00000307900.1	Lincred1-232	2810	No protein	-	lncRNA	-
ENSMUST00000307883.1	Lincred1-215	2679	No protein	-	lncRNA	-
ENSMUST00000307888.1	Lincred1-220	2645	No protein	-	lncRNA	-
ENSMUST00000250111.1	Lincred1-206	2429	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242082.1	Lincred1-202	2382	No protein	-	lncRNA	-
ENSMUST00000307884.1	Lincred1-216	2251	No protein	-	lncRNA	-
ENSMUST00000250114.1	Lincred1-209	2110	No protein	-	lncRNA	-
ENSMUST00000307907.1	Lincred1-239	2096	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000307896.1	Lincred1-228	2093	No protein	-	lncRNA	-
ENSMUST00000307895.1	Lincred1-227	2050	No protein	-	lncRNA	-
ENSMUST00000307892.1	Lincred1-224	2036	No protein	-	lncRNA	-
ENSMUST00000307908.1	Lincred1-240	1975	No protein	-	lncRNA	-
ENSMUST00000307899.1	Lincred1-231	1960	No protein	-	lncRNA	-
ENSMUST00000250109.1	Lincred1-204	1954	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000307885.1	Lincred1-217	1867	No protein	-	lncRNA	-
ENSMUST00000250112.1	Lincred1-207	1814	No protein	-	lncRNA	-
ENSMUST00000250110.1	Lincred1-205	1753	No protein	-	lncRNA	-
ENSMUST00000307886.1	Lincred1-218	1671	No protein	-	lncRNA	-
ENSMUST00000307893.1	Lincred1-225	1665	No protein	-	lncRNA	-
ENSMUST00000307909.1	Lincred1-241	1524	No protein	-	lncRNA	-
ENSMUST00000307887.1	Lincred1-219	1513	No protein	-	lncRNA	-
ENSMUST00000307906.1	Lincred1-238	1482	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000307902.1	Lincred1-234	1480	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000250108.1	Lincred1-203	1432	No protein	-	lncRNA	-
ENSMUST00000307904.1	Lincred1-236	1370	No protein	-	lncRNA	-
ENSMUST00000307905.1	Lincred1-237	1351	No protein	-	lncRNA	-
ENSMUST00000307901.1	Lincred1-233	1324	No protein	-	lncRNA	-
ENSMUST00000307890.1	Lincred1-222	1280	No protein	-	lncRNA	-
ENSMUST00000307894.1	Lincred1-226	1201	No protein	-	lncRNA	-
ENSMUST00000307903.1	Lincred1-235	1200	No protein	-	lncRNA	-
ENSMUST00000307897.1	Lincred1-229	1078	No protein	-	lncRNA	-
ENSMUST00000307898.1	Lincred1-230	886	No protein	-	lncRNA	-
ENSMUST00000307881.1	Lincred1-213	728	No protein	-	lncRNA	-
ENSMUST00000307880.1	Lincred1-212	709	No protein	-	lncRNA	-
ENSMUST00000307891.1	Lincred1-223	558	No protein	-	lncRNA	-
ENSMUST00000307910.1	Lincred1-242	530	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 3,716 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000149025.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000149025.2 Lincred1-201

Summary

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Transcript: ENSMUST00000149025.2 Lincred1-201

Summary

About Us

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