Transcript: ENSMUST00000142533.3 Gm12279-201

Description

predicted gene 12279 [Source:MGI Symbol;Acc:MGI:3649630]

Location

Chromosome 11: 62,435,063-62,441,867 reverse strand.

About this transcript

This transcript has 3 exons, is associated with 748 variant alleles and maps to 30 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000087120.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000251150.1	Gm12279-205	962	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000251166.1	Gm12279-221	2476	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241978.2	Gm12279-202	2410	No protein	-	lncRNA	-
ENSMUST00000142533.3	Gm12279-201	1799	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000251151.1	Gm12279-206	1721	No protein	-	lncRNA	-
ENSMUST00000251159.1	Gm12279-214	1624	No protein	-	lncRNA	-
ENSMUST00000251155.1	Gm12279-210	1514	No protein	-	lncRNA	-
ENSMUST00000251171.1	Gm12279-226	1507	No protein	-	lncRNA	-
ENSMUST00000245911.2	Gm12279-204	1354	No protein	-	lncRNA	-
ENSMUST00000251168.1	Gm12279-223	1086	No protein	-	lncRNA	-
ENSMUST00000251154.1	Gm12279-209	978	No protein	-	lncRNA	-
ENSMUST00000251152.1	Gm12279-207	970	No protein	-	lncRNA	-
ENSMUST00000251153.1	Gm12279-208	921	No protein	-	lncRNA	-
ENSMUST00000251170.1	Gm12279-225	864	No protein	-	lncRNA	-
ENSMUST00000251169.1	Gm12279-224	862	No protein	-	lncRNA	-
ENSMUST00000251160.1	Gm12279-215	820	No protein	-	lncRNA	-
ENSMUST00000251157.1	Gm12279-212	808	No protein	-	lncRNA	-
ENSMUST00000251179.1	Gm12279-234	807	No protein	-	lncRNA	-
ENSMUST00000245332.2	Gm12279-203	805	No protein	-	lncRNA	-
ENSMUST00000251163.1	Gm12279-218	716	No protein	-	lncRNA	-
ENSMUST00000251156.1	Gm12279-211	715	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000251177.1	Gm12279-232	667	No protein	-	lncRNA	-
ENSMUST00000251158.1	Gm12279-213	659	No protein	-	lncRNA	-
ENSMUST00000251162.1	Gm12279-217	658	No protein	-	lncRNA	-
ENSMUST00000251164.1	Gm12279-219	639	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000251167.1	Gm12279-222	637	No protein	-	lncRNA	-
ENSMUST00000251165.1	Gm12279-220	620	No protein	-	lncRNA	-
ENSMUST00000251161.1	Gm12279-216	616	No protein	-	lncRNA	-
ENSMUST00000251175.1	Gm12279-230	606	No protein	-	lncRNA	-
ENSMUST00000251174.1	Gm12279-229	593	No protein	-	lncRNA	-
ENSMUST00000251173.1	Gm12279-228	586	No protein	-	lncRNA	-
ENSMUST00000251176.1	Gm12279-231	545	No protein	-	lncRNA	-
ENSMUST00000251172.1	Gm12279-227	515	No protein	-	lncRNA	-
ENSMUST00000251178.1	Gm12279-233	457	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,799 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000142533.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENSMUST00000142533.3 Gm12279-201

Summary

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Transcript: ENSMUST00000142533.3 Gm12279-201

Summary

About Us

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