Transcript: ENSMUST00000140111.8 2610005L07Rik-202

Description

cadherin 11 pseudogene [Source:NCBI gene (formerly Entrezgene);Acc:381598]

Gene Synonyms

2810038F24Rik, 6720476A01Rik

Location

Chromosome 8: 20,016,466-20,055,498 forward strand.

About this transcript

This transcript has 6 exons, is associated with 1067 variant alleles and maps to 347 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121345.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000281931.1	2610005L07Rik-203	1459	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000282024.1	2610005L07Rik-295	4916	No protein	-	lncRNA	-
ENSMUST00000282025.1	2610005L07Rik-296	4901	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000140111.8	2610005L07Rik-202	4009	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000282038.1	2610005L07Rik-309	3955	No protein	-	lncRNA	-
ENSMUST00000281933.1	2610005L07Rik-205	3858	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281932.1	2610005L07Rik-204	3660	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282048.1	2610005L07Rik-319	3225	No protein	-	lncRNA	-
ENSMUST00000282063.1	2610005L07Rik-334	3144	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282068.1	2610005L07Rik-339	3112	No protein	-	lncRNA	-
ENSMUST00000282054.1	2610005L07Rik-325	3042	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282036.1	2610005L07Rik-307	2976	No protein	-	lncRNA	-
ENSMUST00000282027.1	2610005L07Rik-298	2867	No protein	-	lncRNA	-
ENSMUST00000282069.1	2610005L07Rik-340	2847	No protein	-	lncRNA	-
ENSMUST00000282028.1	2610005L07Rik-299	2825	No protein	-	lncRNA	-
ENSMUST00000282082.1	2610005L07Rik-353	2745	No protein	-	lncRNA	-
ENSMUST00000282029.1	2610005L07Rik-300	2586	No protein	-	lncRNA	-
ENSMUST00000281988.1	2610005L07Rik-260	2467	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282057.1	2610005L07Rik-328	2445	No protein	-	lncRNA	-
ENSMUST00000282035.1	2610005L07Rik-306	2387	No protein	-	lncRNA	-
ENSMUST00000282046.1	2610005L07Rik-317	2371	No protein	-	lncRNA	-
ENSMUST00000282031.1	2610005L07Rik-302	2353	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282094.1	2610005L07Rik-365	2302	No protein	-	lncRNA	-
ENSMUST00000281990.1	2610005L07Rik-262	2294	No protein	-	lncRNA	-
ENSMUST00000282030.1	2610005L07Rik-301	2292	No protein	-	lncRNA	-
ENSMUST00000281940.1	2610005L07Rik-212	2278	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282032.1	2610005L07Rik-303	2253	No protein	-	lncRNA	-
ENSMUST00000281953.1	2610005L07Rik-225	2216	No protein	-	lncRNA	-
ENSMUST00000281936.1	2610005L07Rik-208	2190	No protein	-	lncRNA	-
ENSMUST00000282033.1	2610005L07Rik-304	2176	No protein	-	lncRNA	-
ENSMUST00000281971.1	2610005L07Rik-243	2169	No protein	-	lncRNA	-
ENSMUST00000281974.1	2610005L07Rik-246	2138	No protein	-	lncRNA	-
ENSMUST00000281982.1	2610005L07Rik-254	2107	No protein	-	lncRNA	-
ENSMUST00000282039.1	2610005L07Rik-310	2068	No protein	-	lncRNA	-
ENSMUST00000281942.1	2610005L07Rik-214	2047	No protein	-	lncRNA	-
ENSMUST00000282034.1	2610005L07Rik-305	2044	No protein	-	lncRNA	-
ENSMUST00000282017.1	2610005L07Rik-289	2007	No protein	-	lncRNA	-
ENSMUST00000281939.1	2610005L07Rik-211	1998	No protein	-	lncRNA	-
ENSMUST00000281943.1	2610005L07Rik-215	1992	No protein	-	lncRNA	-
ENSMUST00000281970.1	2610005L07Rik-242	1983	No protein	-	lncRNA	-
ENSMUST00000281935.1	2610005L07Rik-207	1946	No protein	-	lncRNA	-
ENSMUST00000281973.1	2610005L07Rik-245	1941	No protein	-	lncRNA	-
ENSMUST00000281944.1	2610005L07Rik-216	1927	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281945.1	2610005L07Rik-217	1914	No protein	-	lncRNA	-
ENSMUST00000281984.1	2610005L07Rik-256	1907	No protein	-	lncRNA	-
ENSMUST00000281986.1	2610005L07Rik-258	1896	No protein	-	lncRNA	-
ENSMUST00000281934.1	2610005L07Rik-206	1892	No protein	-	lncRNA	-
ENSMUST00000282037.1	2610005L07Rik-308	1881	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281947.1	2610005L07Rik-219	1819	No protein	-	lncRNA	-
ENSMUST00000282011.1	2610005L07Rik-283	1806	No protein	-	lncRNA	-
ENSMUST00000281972.1	2610005L07Rik-244	1777	No protein	-	lncRNA	-
ENSMUST00000282078.1	2610005L07Rik-349	1764	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282043.1	2610005L07Rik-314	1749	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281937.1	2610005L07Rik-209	1738	No protein	-	lncRNA	-
ENSMUST00000281938.1	2610005L07Rik-210	1737	No protein	-	lncRNA	-
ENSMUST00000281967.1	2610005L07Rik-239	1729	No protein	-	lncRNA	-
ENSMUST00000281987.1	2610005L07Rik-259	1728	No protein	-	lncRNA	-
ENSMUST00000282085.1	2610005L07Rik-356	1728	No protein	-	lncRNA	-
ENSMUST00000281957.1	2610005L07Rik-229	1724	No protein	-	lncRNA	-
ENSMUST00000281966.1	2610005L07Rik-238	1712	No protein	-	lncRNA	-
ENSMUST00000281941.1	2610005L07Rik-213	1711	No protein	-	lncRNA	-
ENSMUST00000281980.1	2610005L07Rik-252	1703	No protein	-	lncRNA	-
ENSMUST00000282006.1	2610005L07Rik-278	1701	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281951.1	2610005L07Rik-223	1692	No protein	-	lncRNA	-
ENSMUST00000282065.1	2610005L07Rik-336	1682	No protein	-	lncRNA	-
ENSMUST00000282058.1	2610005L07Rik-329	1681	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282004.1	2610005L07Rik-276	1674	No protein	-	lncRNA	-
ENSMUST00000282055.1	2610005L07Rik-326	1662	No protein	-	lncRNA	-
ENSMUST00000281949.1	2610005L07Rik-221	1625	No protein	-	lncRNA	-
ENSMUST00000282040.1	2610005L07Rik-311	1619	No protein	-	lncRNA	-
ENSMUST00000282062.1	2610005L07Rik-333	1615	No protein	-	lncRNA	-
ENSMUST00000282042.1	2610005L07Rik-313	1605	No protein	-	lncRNA	-
ENSMUST00000282005.1	2610005L07Rik-277	1594	No protein	-	lncRNA	-
ENSMUST00000281979.1	2610005L07Rik-251	1593	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281950.1	2610005L07Rik-222	1580	No protein	-	lncRNA	-
ENSMUST00000281956.1	2610005L07Rik-228	1576	No protein	-	lncRNA	-
ENSMUST00000282050.1	2610005L07Rik-321	1569	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282079.1	2610005L07Rik-350	1567	No protein	-	lncRNA	-
ENSMUST00000281991.1	2610005L07Rik-263	1559	No protein	-	lncRNA	-
ENSMUST00000281998.1	2610005L07Rik-270	1557	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281977.1	2610005L07Rik-249	1555	No protein	-	lncRNA	-
ENSMUST00000282061.1	2610005L07Rik-332	1543	No protein	-	lncRNA	-
ENSMUST00000281968.1	2610005L07Rik-240	1540	No protein	-	lncRNA	-
ENSMUST00000282067.1	2610005L07Rik-338	1535	No protein	-	lncRNA	-
ENSMUST00000282002.1	2610005L07Rik-274	1529	No protein	-	lncRNA	-
ENSMUST00000282096.1	2610005L07Rik-367	1523	No protein	-	lncRNA	-
ENSMUST00000281969.1	2610005L07Rik-241	1515	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281995.1	2610005L07Rik-267	1512	No protein	-	lncRNA	-
ENSMUST00000282101.1	2610005L07Rik-372	1510	No protein	-	lncRNA	-
ENSMUST00000282074.1	2610005L07Rik-345	1499	No protein	-	lncRNA	-
ENSMUST00000282001.1	2610005L07Rik-273	1476	No protein	-	lncRNA	-
ENSMUST00000282044.1	2610005L07Rik-315	1464	No protein	-	lncRNA	-
ENSMUST00000281948.1	2610005L07Rik-220	1460	No protein	-	lncRNA	-
ENSMUST00000282056.1	2610005L07Rik-327	1457	No protein	-	lncRNA	-
ENSMUST00000281961.1	2610005L07Rik-233	1449	No protein	-	lncRNA	-
ENSMUST00000282086.1	2610005L07Rik-357	1447	No protein	-	lncRNA	-
ENSMUST00000282016.1	2610005L07Rik-288	1444	No protein	-	lncRNA	-
ENSMUST00000282047.1	2610005L07Rik-318	1413	No protein	-	lncRNA	-
ENSMUST00000281983.1	2610005L07Rik-255	1409	No protein	-	lncRNA	-
ENSMUST00000282049.1	2610005L07Rik-320	1406	No protein	-	lncRNA	-
ENSMUST00000282009.1	2610005L07Rik-281	1405	No protein	-	lncRNA	-
ENSMUST00000281946.1	2610005L07Rik-218	1402	No protein	-	lncRNA	-
ENSMUST00000282041.1	2610005L07Rik-312	1401	No protein	-	lncRNA	-
ENSMUST00000281992.1	2610005L07Rik-264	1398	No protein	-	lncRNA	-
ENSMUST00000282081.1	2610005L07Rik-352	1394	No protein	-	lncRNA	-
ENSMUST00000282052.1	2610005L07Rik-323	1392	No protein	-	lncRNA	-
ENSMUST00000281975.1	2610005L07Rik-247	1390	No protein	-	lncRNA	-
ENSMUST00000281955.1	2610005L07Rik-227	1384	No protein	-	lncRNA	-
ENSMUST00000281960.1	2610005L07Rik-232	1380	No protein	-	lncRNA	-
ENSMUST00000281994.1	2610005L07Rik-266	1377	No protein	-	lncRNA	-
ENSMUST00000281999.1	2610005L07Rik-271	1373	No protein	-	lncRNA	-
ENSMUST00000282000.1	2610005L07Rik-272	1368	No protein	-	lncRNA	-
ENSMUST00000281996.1	2610005L07Rik-268	1367	No protein	-	lncRNA	-
ENSMUST00000281997.1	2610005L07Rik-269	1366	No protein	-	lncRNA	-
ENSMUST00000281981.1	2610005L07Rik-253	1352	No protein	-	lncRNA	-
ENSMUST00000282075.1	2610005L07Rik-346	1333	No protein	-	lncRNA	-
ENSMUST00000281965.1	2610005L07Rik-237	1327	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281954.1	2610005L07Rik-226	1326	No protein	-	lncRNA	-
ENSMUST00000281993.1	2610005L07Rik-265	1319	No protein	-	lncRNA	-
ENSMUST00000282051.1	2610005L07Rik-322	1318	No protein	-	lncRNA	-
ENSMUST00000282059.1	2610005L07Rik-330	1309	No protein	-	lncRNA	-
ENSMUST00000281964.1	2610005L07Rik-236	1305	No protein	-	lncRNA	-
ENSMUST00000281952.1	2610005L07Rik-224	1276	No protein	-	lncRNA	-
ENSMUST00000282018.1	2610005L07Rik-290	1274	No protein	-	lncRNA	-
ENSMUST00000282003.1	2610005L07Rik-275	1270	No protein	-	lncRNA	-
ENSMUST00000282015.1	2610005L07Rik-287	1247	No protein	-	lncRNA	-
ENSMUST00000282088.1	2610005L07Rik-359	1240	No protein	-	lncRNA	-
ENSMUST00000281978.1	2610005L07Rik-250	1228	No protein	-	lncRNA	-
ENSMUST00000282008.1	2610005L07Rik-280	1225	No protein	-	lncRNA	-
ENSMUST00000281989.1	2610005L07Rik-261	1220	No protein	-	lncRNA	-
ENSMUST00000281962.1	2610005L07Rik-234	1212	No protein	-	lncRNA	-
ENSMUST00000282091.1	2610005L07Rik-362	1211	No protein	-	lncRNA	-
ENSMUST00000282020.1	2610005L07Rik-292	1203	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281976.1	2610005L07Rik-248	1184	No protein	-	lncRNA	-
ENSMUST00000282013.1	2610005L07Rik-285	1182	No protein	-	lncRNA	-
ENSMUST00000282022.1	2610005L07Rik-294	1175	No protein	-	lncRNA	-
ENSMUST00000282092.1	2610005L07Rik-363	1136	No protein	-	lncRNA	-
ENSMUST00000282012.1	2610005L07Rik-284	1134	No protein	-	lncRNA	-
ENSMUST00000282095.1	2610005L07Rik-366	1129	No protein	-	lncRNA	-
ENSMUST00000282087.1	2610005L07Rik-358	1114	No protein	-	lncRNA	-
ENSMUST00000282071.1	2610005L07Rik-342	1112	No protein	-	lncRNA	-
ENSMUST00000282014.1	2610005L07Rik-286	1110	No protein	-	lncRNA	-
ENSMUST00000281959.1	2610005L07Rik-231	1101	No protein	-	lncRNA	-
ENSMUST00000282104.1	2610005L07Rik-375	1097	No protein	-	lncRNA	-
ENSMUST00000282084.1	2610005L07Rik-355	1096	No protein	-	lncRNA	-
ENSMUST00000282053.1	2610005L07Rik-324	1094	No protein	-	lncRNA	-
ENSMUST00000282072.1	2610005L07Rik-343	1093	No protein	-	lncRNA	-
ENSMUST00000282073.1	2610005L07Rik-344	1092	No protein	-	lncRNA	-
ENSMUST00000282089.1	2610005L07Rik-360	1071	No protein	-	lncRNA	-
ENSMUST00000282070.1	2610005L07Rik-341	1061	No protein	-	lncRNA	-
ENSMUST00000282103.1	2610005L07Rik-374	1047	No protein	-	lncRNA	-
ENSMUST00000282105.1	2610005L07Rik-376	1039	No protein	-	lncRNA	-
ENSMUST00000282045.1	2610005L07Rik-316	1025	No protein	-	lncRNA	-
ENSMUST00000282066.1	2610005L07Rik-337	1021	No protein	-	lncRNA	-
ENSMUST00000281958.1	2610005L07Rik-230	997	No protein	-	lncRNA	-
ENSMUST00000282064.1	2610005L07Rik-335	987	No protein	-	lncRNA	-
ENSMUST00000282093.1	2610005L07Rik-364	956	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000282077.1	2610005L07Rik-348	932	No protein	-	lncRNA	-
ENSMUST00000281963.1	2610005L07Rik-235	929	No protein	-	lncRNA	-
ENSMUST00000282026.1	2610005L07Rik-297	924	No protein	-	lncRNA	-
ENSMUST00000282021.1	2610005L07Rik-293	903	No protein	-	lncRNA	-
ENSMUST00000282060.1	2610005L07Rik-331	878	No protein	-	lncRNA	-
ENSMUST00000282083.1	2610005L07Rik-354	872	No protein	-	lncRNA	-
ENSMUST00000282099.1	2610005L07Rik-370	855	No protein	-	lncRNA	-
ENSMUST00000282090.1	2610005L07Rik-361	846	No protein	-	lncRNA	-
ENSMUST00000282007.1	2610005L07Rik-279	836	No protein	-	lncRNA	-
ENSMUST00000282100.1	2610005L07Rik-371	826	No protein	-	lncRNA	-
ENSMUST00000282097.1	2610005L07Rik-368	803	No protein	-	lncRNA	-
ENSMUST00000282080.1	2610005L07Rik-351	800	No protein	-	lncRNA	-
ENSMUST00000282076.1	2610005L07Rik-347	789	No protein	-	lncRNA	-
ENSMUST00000282098.1	2610005L07Rik-369	776	No protein	-	lncRNA	-
ENSMUST00000282102.1	2610005L07Rik-373	735	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281985.1	2610005L07Rik-257	723	No protein	-	lncRNA	-
ENSMUST00000282010.1	2610005L07Rik-282	674	No protein	-	lncRNA	-
ENSMUST00000282019.1	2610005L07Rik-291	614	No protein	-	lncRNA	-
ENSMUST00000282106.1	2610005L07Rik-377	430	No protein	-	lncRNA	-
ENSMUST00000282107.1	2610005L07Rik-378	309	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 4,009 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000140111.8

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

overlaps pseudogene [Definitions]

pseudogene transcript

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000140111.8 2610005L07Rik-202

Summary

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Transcript: ENSMUST00000140111.8 2610005L07Rik-202

Summary

About Us

Get help

Our sister sites

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