Transcript: ENSMUST00000137463.9 5730471H19Rik-202

Description

RIKEN cDNA 5730471H19 gene [Source:MGI Symbol;Acc:MGI:3642639]

Gene Synonyms

Gm14230

Location

Chromosome 2: 156,672,626-156,681,821 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 1278 variant alleles and maps to 131 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000087179.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000134838.3	5730471H19Rik-201	1232	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000246784.1	5730471H19Rik-207	3639	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368260.1	5730471H19Rik-228	3413	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000137463.9	5730471H19Rik-202	3298	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000244235.1	5730471H19Rik-205	3112	No protein	-	lncRNA	-
ENSMUST00000247643.1	5730471H19Rik-208	3107	No protein	-	lncRNA	-
ENSMUST00000368261.1	5730471H19Rik-229	2849	No protein	-	lncRNA	-
ENSMUST00000368245.1	5730471H19Rik-213	1894	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368244.1	5730471H19Rik-212	1442	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000246618.2	5730471H19Rik-206	1335	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368246.1	5730471H19Rik-214	1331	No protein	-	lncRNA	-
ENSMUST00000368247.1	5730471H19Rik-215	1312	No protein	-	lncRNA	-
ENSMUST00000368263.1	5730471H19Rik-231	1305	No protein	-	lncRNA	-
ENSMUST00000368250.1	5730471H19Rik-218	1260	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368249.1	5730471H19Rik-217	1244	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368262.1	5730471H19Rik-230	1158	No protein	-	lncRNA	-
ENSMUST00000368248.1	5730471H19Rik-216	1083	No protein	-	lncRNA	-
ENSMUST00000368255.1	5730471H19Rik-223	848	No protein	-	lncRNA	-
ENSMUST00000368243.1	5730471H19Rik-211	814	No protein	-	lncRNA	-
ENSMUST00000368254.1	5730471H19Rik-222	799	No protein	-	lncRNA	-
ENSMUST00000243459.2	5730471H19Rik-204	773	No protein	-	lncRNA	-
ENSMUST00000368251.1	5730471H19Rik-219	759	No protein	-	lncRNA	-
ENSMUST00000368242.1	5730471H19Rik-210	704	No protein	-	lncRNA	-
ENSMUST00000368258.1	5730471H19Rik-226	675	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368266.1	5730471H19Rik-234	664	No protein	-	lncRNA	-
ENSMUST00000368265.1	5730471H19Rik-233	655	No protein	-	lncRNA	-
ENSMUST00000368259.1	5730471H19Rik-227	640	No protein	-	lncRNA	-
ENSMUST00000368253.1	5730471H19Rik-221	614	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000368256.1	5730471H19Rik-224	607	No protein	-	lncRNA	-
ENSMUST00000368257.1	5730471H19Rik-225	553	No protein	-	lncRNA	-
ENSMUST00000368241.1	5730471H19Rik-209	536	No protein	-	lncRNA	-
ENSMUST00000368252.1	5730471H19Rik-220	504	No protein	-	lncRNA	-
ENSMUST00000368267.1	5730471H19Rik-235	401	No protein	-	lncRNA	-
ENSMUST00000149275.3	5730471H19Rik-203	388	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000368264.1	5730471H19Rik-232	377	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 3,298 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENSMUST00000137463.9

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000137463.9 5730471H19Rik-202

Summary

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Transcript: ENSMUST00000137463.9 5730471H19Rik-202

Summary

About Us

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