Transcript: ENSMUST00000126910.9 1700026D11Rik-201

Description

RIKEN cDNA 1700026D11 gene [Source:MGI Symbol;Acc:MGI:1917621]

Location

Chromosome 2: 132,332,618-132,355,822 forward strand.

About this transcript

This transcript has 3 exons, is associated with 2253 variant alleles and maps to 44 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000086379.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000259491.1	1700026D11Rik-207	861	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000126910.9	1700026D11Rik-201	2051	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000259533.1	1700026D11Rik-249	1573	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000259537.1	1700026D11Rik-253	1573	No protein	-	lncRNA	-
ENSMUST00000259532.1	1700026D11Rik-248	1355	No protein	-	lncRNA	-
ENSMUST00000259530.1	1700026D11Rik-246	1294	No protein	-	lncRNA	-
ENSMUST00000259531.1	1700026D11Rik-247	1200	No protein	-	lncRNA	-
ENSMUST00000259494.1	1700026D11Rik-210	1130	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000259503.1	1700026D11Rik-219	1092	No protein	-	lncRNA	-
ENSMUST00000259510.1	1700026D11Rik-226	1082	No protein	-	lncRNA	-
ENSMUST00000259492.1	1700026D11Rik-208	1058	No protein	-	lncRNA	-
ENSMUST00000259496.1	1700026D11Rik-212	1012	No protein	-	lncRNA	-
ENSMUST00000154067.9	1700026D11Rik-206	965	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000259495.1	1700026D11Rik-211	953	No protein	-	lncRNA	-
ENSMUST00000259524.1	1700026D11Rik-240	944	No protein	-	lncRNA	-
ENSMUST00000259535.1	1700026D11Rik-251	944	No protein	-	lncRNA	-
ENSMUST00000259500.1	1700026D11Rik-216	940	No protein	-	lncRNA	-
ENSMUST00000259518.1	1700026D11Rik-234	933	No protein	-	lncRNA	-
ENSMUST00000259505.1	1700026D11Rik-221	922	No protein	-	lncRNA	-
ENSMUST00000259506.1	1700026D11Rik-222	920	No protein	-	lncRNA	-
ENSMUST00000259499.1	1700026D11Rik-215	908	No protein	-	lncRNA	-
ENSMUST00000259525.1	1700026D11Rik-241	899	No protein	-	lncRNA	-
ENSMUST00000146398.3	1700026D11Rik-204	864	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000151417.9	1700026D11Rik-205	855	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000259507.1	1700026D11Rik-223	854	No protein	-	lncRNA	-
ENSMUST00000259497.1	1700026D11Rik-213	843	No protein	-	lncRNA	-
ENSMUST00000259508.1	1700026D11Rik-224	832	No protein	-	lncRNA	-
ENSMUST00000259516.1	1700026D11Rik-232	816	No protein	-	lncRNA	-
ENSMUST00000259504.1	1700026D11Rik-220	801	No protein	-	lncRNA	-
ENSMUST00000144501.3	1700026D11Rik-203	792	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000259519.1	1700026D11Rik-235	765	No protein	-	lncRNA	-
ENSMUST00000259515.1	1700026D11Rik-231	759	No protein	-	lncRNA	-
ENSMUST00000259514.1	1700026D11Rik-230	753	No protein	-	lncRNA	-
ENSMUST00000259501.1	1700026D11Rik-217	736	No protein	-	lncRNA	-
ENSMUST00000259498.1	1700026D11Rik-214	716	No protein	-	lncRNA	-
ENSMUST00000259536.1	1700026D11Rik-252	709	No protein	-	lncRNA	-
ENSMUST00000259513.1	1700026D11Rik-229	691	No protein	-	lncRNA	-
ENSMUST00000259502.1	1700026D11Rik-218	690	No protein	-	lncRNA	-
ENSMUST00000259528.1	1700026D11Rik-244	689	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000259517.1	1700026D11Rik-233	688	No protein	-	lncRNA	-
ENSMUST00000259522.1	1700026D11Rik-238	657	No protein	-	lncRNA	-
ENSMUST00000130884.9	1700026D11Rik-202	654	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000259520.1	1700026D11Rik-236	634	No protein	-	lncRNA	-
ENSMUST00000259493.1	1700026D11Rik-209	632	No protein	-	lncRNA	-
ENSMUST00000259511.1	1700026D11Rik-227	626	No protein	-	lncRNA	-
ENSMUST00000259509.1	1700026D11Rik-225	624	No protein	-	lncRNA	-
ENSMUST00000259527.1	1700026D11Rik-243	596	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000259534.1	1700026D11Rik-250	561	No protein	-	lncRNA	-
ENSMUST00000259526.1	1700026D11Rik-242	541	No protein	-	lncRNA	-
ENSMUST00000259512.1	1700026D11Rik-228	518	No protein	-	lncRNA	-
ENSMUST00000259523.1	1700026D11Rik-239	424	No protein	-	lncRNA	-
ENSMUST00000259529.1	1700026D11Rik-245	392	No protein	-	lncRNA	-
ENSMUST00000259521.1	1700026D11Rik-237	386	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,051 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000126910.9

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000126910.9 1700026D11Rik-201

Summary

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Transcript: ENSMUST00000126910.9 1700026D11Rik-201

Summary

About Us

Get help

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