Transcript: ENSMUST00000103733.2 Traj7-201

Description

T cell receptor alpha joining 7 [Source:MGI Symbol;Acc:MGI:4439843]

Gene Synonyms

Gm16919

Location

Chromosome 14: 54,448,927-54,448,985 forward strand.

About this transcript

This transcript has 1 exon, is associated with 526 variant alleles and maps to 34 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000076921.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000103733.2	Traj7-201	59	20aa	ENSMUSP00000143149.2	Joining chain T cell receptor gene that undergoes somatic recombination before transcriptionTR J gene		A0A0G2JFF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 59 bps, Translation length: 20 residues

Transcript Support Level (TSL)

TSL:NA

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSMUST00000103733.2

Type

TR J gene

Annotation Method

Immunoglobulin (Ig) and T-cell receptor (TcR) annotation from Ensembl and Havana. Havana annotation was imported from the Havana project's manually curated IG gene set. Ensembl annotation was imported from the IMGT database using Exonerate. Click here for more details about the Ensembl annotation.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000103733.2 Traj7-201

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Transcript: ENSMUST00000103733.2 Traj7-201

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