Transcript: ENSMUST00000064930.8 C130026L21Rik-201

Description

RIKEN cDNA C130026L21 gene [Source:MGI Symbol;Acc:MGI:3041189]

Location

Chromosome 5: 111,729,288-111,735,811 forward strand.

About this transcript

This transcript has 4 exons, is associated with 891 variant alleles and maps to 90 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000052848.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000298556.1	C130026L21Rik-205	2017	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000064930.8	C130026L21Rik-201	2472	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000298597.1	C130026L21Rik-246	2219	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000199587.3	C130026L21Rik-204	2194	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000298596.1	C130026L21Rik-245	2179	No protein	-	lncRNA	-
ENSMUST00000298598.1	C130026L21Rik-247	1870	No protein	-	lncRNA	-
ENSMUST00000298602.1	C130026L21Rik-251	1740	No protein	-	lncRNA	-
ENSMUST00000298561.1	C130026L21Rik-210	1640	No protein	-	lncRNA	-
ENSMUST00000298568.1	C130026L21Rik-217	1519	No protein	-	lncRNA	-
ENSMUST00000298558.1	C130026L21Rik-207	1499	No protein	-	lncRNA	-
ENSMUST00000198458.3	C130026L21Rik-203	1400	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000298557.1	C130026L21Rik-206	1395	No protein	-	lncRNA	-
ENSMUST00000298569.1	C130026L21Rik-218	1374	No protein	-	lncRNA	-
ENSMUST00000298585.1	C130026L21Rik-234	1351	No protein	-	lncRNA	-
ENSMUST00000298613.1	C130026L21Rik-262	1348	No protein	-	lncRNA	-
ENSMUST00000298599.1	C130026L21Rik-248	1330	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298615.1	C130026L21Rik-264	1326	No protein	-	lncRNA	-
ENSMUST00000298560.1	C130026L21Rik-209	1320	No protein	-	lncRNA	-
ENSMUST00000298570.1	C130026L21Rik-219	1246	No protein	-	lncRNA	-
ENSMUST00000298600.1	C130026L21Rik-249	1227	No protein	-	lncRNA	-
ENSMUST00000298601.1	C130026L21Rik-250	1199	No protein	-	lncRNA	-
ENSMUST00000298588.1	C130026L21Rik-237	1149	No protein	-	lncRNA	-
ENSMUST00000298579.1	C130026L21Rik-228	1143	No protein	-	lncRNA	-
ENSMUST00000298594.1	C130026L21Rik-243	1116	No protein	-	lncRNA	-
ENSMUST00000298618.1	C130026L21Rik-267	1088	No protein	-	lncRNA	-
ENSMUST00000298562.1	C130026L21Rik-211	1070	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298612.1	C130026L21Rik-261	1063	No protein	-	lncRNA	-
ENSMUST00000298584.1	C130026L21Rik-233	1054	No protein	-	lncRNA	-
ENSMUST00000298563.1	C130026L21Rik-212	1051	No protein	-	lncRNA	-
ENSMUST00000298605.1	C130026L21Rik-254	1017	No protein	-	lncRNA	-
ENSMUST00000298559.1	C130026L21Rik-208	1012	No protein	-	lncRNA	-
ENSMUST00000298592.1	C130026L21Rik-241	1004	No protein	-	lncRNA	-
ENSMUST00000298610.1	C130026L21Rik-259	985	No protein	-	lncRNA	-
ENSMUST00000298567.1	C130026L21Rik-216	975	No protein	-	lncRNA	-
ENSMUST00000298607.1	C130026L21Rik-256	959	No protein	-	lncRNA	-
ENSMUST00000298604.1	C130026L21Rik-253	958	No protein	-	lncRNA	-
ENSMUST00000298611.1	C130026L21Rik-260	947	No protein	-	lncRNA	-
ENSMUST00000298578.1	C130026L21Rik-227	945	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298564.1	C130026L21Rik-213	924	No protein	-	lncRNA	-
ENSMUST00000298574.1	C130026L21Rik-223	891	No protein	-	lncRNA	-
ENSMUST00000298593.1	C130026L21Rik-242	868	No protein	-	lncRNA	-
ENSMUST00000298606.1	C130026L21Rik-255	865	No protein	-	lncRNA	-
ENSMUST00000298582.1	C130026L21Rik-231	857	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298571.1	C130026L21Rik-220	828	No protein	-	lncRNA	-
ENSMUST00000298616.1	C130026L21Rik-265	821	No protein	-	lncRNA	-
ENSMUST00000298586.1	C130026L21Rik-235	814	No protein	-	lncRNA	-
ENSMUST00000298608.1	C130026L21Rik-257	804	No protein	-	lncRNA	-
ENSMUST00000298617.1	C130026L21Rik-266	795	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298577.1	C130026L21Rik-226	779	No protein	-	lncRNA	-
ENSMUST00000196725.3	C130026L21Rik-202	778	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000298614.1	C130026L21Rik-263	778	No protein	-	lncRNA	-
ENSMUST00000298572.1	C130026L21Rik-221	771	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298565.1	C130026L21Rik-214	770	No protein	-	lncRNA	-
ENSMUST00000298580.1	C130026L21Rik-229	770	No protein	-	lncRNA	-
ENSMUST00000298576.1	C130026L21Rik-225	760	No protein	-	lncRNA	-
ENSMUST00000298590.1	C130026L21Rik-239	752	No protein	-	lncRNA	-
ENSMUST00000298566.1	C130026L21Rik-215	728	No protein	-	lncRNA	-
ENSMUST00000298573.1	C130026L21Rik-222	680	No protein	-	lncRNA	-
ENSMUST00000298581.1	C130026L21Rik-230	671	No protein	-	lncRNA	-
ENSMUST00000298589.1	C130026L21Rik-238	669	No protein	-	lncRNA	-
ENSMUST00000298583.1	C130026L21Rik-232	645	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000298575.1	C130026L21Rik-224	602	No protein	-	lncRNA	-
ENSMUST00000298587.1	C130026L21Rik-236	599	No protein	-	lncRNA	-
ENSMUST00000298603.1	C130026L21Rik-252	577	No protein	-	lncRNA	-
ENSMUST00000298609.1	C130026L21Rik-258	559	No protein	-	lncRNA	-
ENSMUST00000298591.1	C130026L21Rik-240	495	No protein	-	lncRNA	-
ENSMUST00000298595.1	C130026L21Rik-244	480	No protein	-	lncRNA	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,472 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000064930.8

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000064930.8 C130026L21Rik-201

Summary

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Transcript: ENSMUST00000064930.8 C130026L21Rik-201

Summary

About Us

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