Transcript: ENSMUST00000056170.4 4931422A03Rik-201

Description

RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]

Location

Chromosome 2: 103,822,840-103,858,653 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 2491 variant alleles and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000046085.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000138867.3	4931422A03Rik-202	1147	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000348643.1	4931422A03Rik-204	1181	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000056170.4	4931422A03Rik-201	1037	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000348656.1	4931422A03Rik-217	964	No protein	-	lncRNA	-
ENSMUST00000348653.1	4931422A03Rik-214	896	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348665.1	4931422A03Rik-226	855	No protein	-	lncRNA	-
ENSMUST00000348655.1	4931422A03Rik-216	779	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348654.1	4931422A03Rik-215	739	No protein	-	lncRNA	-
ENSMUST00000348644.1	4931422A03Rik-205	724	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348647.1	4931422A03Rik-208	697	No protein	-	lncRNA	-
ENSMUST00000348661.1	4931422A03Rik-222	691	No protein	-	lncRNA	-
ENSMUST00000348645.1	4931422A03Rik-206	688	No protein	-	lncRNA	-
ENSMUST00000348646.1	4931422A03Rik-207	673	No protein	-	lncRNA	-
ENSMUST00000348648.1	4931422A03Rik-209	671	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000348650.1	4931422A03Rik-211	653	No protein	-	lncRNA	-
ENSMUST00000348649.1	4931422A03Rik-210	609	No protein	-	lncRNA	-
ENSMUST00000348663.1	4931422A03Rik-224	602	No protein	-	lncRNA	-
ENSMUST00000348664.1	4931422A03Rik-225	599	No protein	-	lncRNA	-
ENSMUST00000348657.1	4931422A03Rik-218	585	No protein	-	lncRNA	-
ENSMUST00000348666.1	4931422A03Rik-227	536	No protein	-	lncRNA	-
ENSMUST00000348667.1	4931422A03Rik-228	492	No protein	-	lncRNA	-
ENSMUST00000348658.1	4931422A03Rik-219	475	No protein	-	lncRNA	-
ENSMUST00000348659.1	4931422A03Rik-220	443	No protein	-	lncRNA	-
ENSMUST00000348660.1	4931422A03Rik-221	443	No protein	-	lncRNA	-
ENSMUST00000348652.1	4931422A03Rik-213	408	No protein	-	lncRNA	-
ENSMUST00000348662.1	4931422A03Rik-223	380	No protein	-	lncRNA	-
ENSMUST00000348651.1	4931422A03Rik-212	327	No protein	-	lncRNA	-
ENSMUST00000249270.1	4931422A03Rik-203	314	No protein	-	lncRNA	-
ENSMUST00000348668.1	4931422A03Rik-229	272	No protein	-	lncRNA	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,037 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000056170.4

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000056170.4 4931422A03Rik-201

Summary

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Transcript: ENSMUST00000056170.4 4931422A03Rik-201

Summary

About Us

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