Transcript: ENSMUST00000053559.5 5031434C07Rik-201

Description

RIKEN cDNA 5031434C07 gene [Source:MGI Symbol;Acc:MGI:2442810]

Location

Chromosome 6: 112,262,818-112,265,798 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 686 variant alleles and maps to 73 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000044574.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000188014.2	5031434C07Rik-202	3244	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000053559.5	5031434C07Rik-201	2894	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,894 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000053559.5

Type

LncRNA

Annotation Method

Long intergenic non-coding RNAs (lincRNAs) were annotated by the Ensembl lincRNA annotation pipeline.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000053559.5 5031434C07Rik-201

Summary

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Transcript: ENSMUST00000053559.5 5031434C07Rik-201

Summary

About Us

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