Transcript: ENSMUST00000029642.9 1700061I17Rik-201

Description

RIKEN cDNA 1700061I17 gene [Source:MGI Symbol;Acc:MGI:1920612]

Location

Chromosome 3: 116,854,161-116,871,414 reverse strand.

About this transcript

This transcript has 9 exons, is associated with 1928 variant alleles and maps to 162 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028009.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000300822.1	1700061I17Rik-202	2122	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000300823.1	1700061I17Rik-203	2102	No protein	-	lncRNA	-
ENSMUST00000029642.9	1700061I17Rik-201	1972	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300825.1	1700061I17Rik-205	1456	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300824.1	1700061I17Rik-204	1346	No protein	-	lncRNA	-
ENSMUST00000300826.1	1700061I17Rik-206	337	No protein	-	lncRNA	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,972 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000029642.9

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana (TAGENE) manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000029642.9 1700061I17Rik-201

Summary

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Transcript: ENSMUST00000029642.9 1700061I17Rik-201

Summary

About Us

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