Transcript: ENSMUST00000105046.4 Hmga1b-201

Description

high mobility group AT-hook 1B [Source:MGI Symbol;Acc:MGI:96161]

Gene Synonyms

ENSMUSG00000041059, Hmga1-rs1, Hmgi-rs1

Location

Chromosome 11: 120,653,620-120,655,245 forward strand.

About this transcript

This transcript has 1 exon, is annotated with 19 domains and features, is associated with 510 variant alleles and maps to 218 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000078249.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000105046.4	Hmga1b-201	1626	107aa	ENSMUSP00000100667.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49010	P17095-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000178955.2	Hmga1b-202	120	39aa	ENSMUSP00000137252.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QK51	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,626 bps, Translation length: 107 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17095

CCDS

This transcript is a member of the Mouse CCDS set: CCDS49010

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000105046.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000105046.4 Hmga1b-201

Summary

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Transcript: ENSMUST00000105046.4 Hmga1b-201

Summary

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