Mouse (GRCm39)

Search Mouse (Mus musculus)

Genome assembly: GRCm39 (GCA_000001635.9)

More information and statistics

Download DNA sequence (FASTA)

Convert your data to GRCm39 coordinates

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Other reference assemblies

Other strains

This species has data on 15 additional strains. View list of strains

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download FASTA files for genes, cDNAs, ncRNA, proteins

Download GTF or GFF3 files for genes, cDNAs, ncRNA, proteins

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Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analysis

Download alignments (EMF)


What can I find? Short sequence variants and longer structural variants; disease and other phenotypes

More about variation in Ensembl

Download all variants (GVF)

Variant Effect Predictor


What can I find? Regulatory features like enhancers and promoters, and regulatory activity including ATAC-seq and ChIP-seq tracks.

More about the Ensembl regulatory annotation

Experimental data sources

Download all regulatory features (GFF)