Summary
- Splice variants
- Transcript comparison
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Gene: Tunar ENSMUSG00000097929

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Description

Tcl1 upstream neural differentiation associated RNA [Source:MGI Symbol;Acc:MGI:1917202]

Gene Synonyms

2810011L19Rik, TUNA

Location

Chromosome 12: 105,300,129-105,350,191 forward strand.

GRCm39:CM001005.3

About this gene

This gene has 3 transcripts (splice variants) and 76 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000180458.9	Tunar-201	3282	48aa	ENSMUSP00000147361.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1B0GQX2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000180503.3	Tunar-202	2876	48aa	ENSMUSP00000147289.3	Nonsense mediated decay		A0A1B0GQX2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000222718.2	Tunar-203	3219	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

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Summary

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