Summary
- Splice variants
- Transcript comparison
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Sequence
- Secondary Structure
Comparative Genomics
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- GO: Anatomical entity
Phenotypes
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Gene: Tmem127 ENSMUSG00000034850

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Description

transmembrane protein 127 [Source:MGI Symbol;Acc:MGI:1916720]

Gene Synonyms

2310003P10Rik

Location

Chromosome 2: 127,089,828-127,103,027 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 3 transcripts (splice variants), 199 orthologues and is associated with 59 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000035871.15	Tmem127-201	4811	238aa	ENSMUSP00000035434.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16697	Q8BGP5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000174288.2	Tmem127-202	842	154aa	ENSMUSP00000134629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3UZT7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000174503.2	Tmem127-203	627	145aa	ENSMUSP00000133701.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3UXI2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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