Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Phenotypes
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Gene: Speer9-ps1 ENSMUSG00000107956

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Description

spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1 [Source:MGI Symbol;Acc:MGI:1921199]

Gene Synonyms

SPEER-9

Location

Chromosome 7: 3,175,736-3,194,840 forward strand.

GRCm39:CM001000.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000281831.1	Speer9-ps1-202	734	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000281843.1	Speer9-ps1-214	1099	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281837.1	Speer9-ps1-208	996	No protein	-	lncRNA		-
ENSMUST00000281836.1	Speer9-ps1-207	831	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281832.1	Speer9-ps1-203	831	No protein	-	lncRNA		-
ENSMUST00000281833.1	Speer9-ps1-204	824	No protein	-	lncRNA		-
ENSMUST00000203447.3	Speer9-ps1-201	784	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000281834.1	Speer9-ps1-205	777	No protein	-	lncRNA		-
ENSMUST00000281839.1	Speer9-ps1-210	722	No protein	-	lncRNA		-
ENSMUST00000281842.1	Speer9-ps1-213	692	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000281840.1	Speer9-ps1-211	651	No protein	-	lncRNA		-
ENSMUST00000281835.1	Speer9-ps1-206	600	No protein	-	lncRNA		-
ENSMUST00000281838.1	Speer9-ps1-209	526	No protein	-	lncRNA		-
ENSMUST00000281844.1	Speer9-ps1-215	522	No protein	-	lncRNA		-
ENSMUST00000281841.1	Speer9-ps1-212	464	No protein	-	lncRNA		-
ENSMUST00000281846.1	Speer9-ps1-217	458	No protein	-	lncRNA		-
ENSMUST00000281845.1	Speer9-ps1-216	221	No protein	-	lncRNA		-

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Summary

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