Summary
- Splice variants
- Transcript comparison
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Sequence
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Phenotypes
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Gene: Sp3os ENSMUSG00000063714

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Description

trans-acting transcription factor 3, opposite strand [Source:MGI Symbol;Acc:MGI:1914936]

Gene Synonyms

1700011J10Rik

Location

Chromosome 2: 72,809,251-72,819,598 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000364452.1	Sp3os-206	1071	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000123087.10	Sp3os-201	1168	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000146195.4	Sp3os-204	1158	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000137941.2	Sp3os-203	628	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000247616.2	Sp3os-205	554	No protein	-	lncRNA		-
ENSMUST00000364454.1	Sp3os-208	457	No protein	-	lncRNA		-
ENSMUST00000364455.1	Sp3os-209	431	No protein	-	lncRNA		-
ENSMUST00000364453.1	Sp3os-207	408	No protein	-	lncRNA		-
ENSMUST00000135297.8	Sp3os-202	370	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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