Gene: Ptpn20 ENSMUSG00000021940

Description

protein tyrosine phosphatase, non-receptor type 20 [Source:MGI Symbol;Acc:MGI:1196295]

Gene Synonyms

typ

Location

Chromosome 14: 33,311,164-33,362,711 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 3 transcripts (splice variants), 189 orthologues, 36 paralogues and is associated with 9 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022508.8	Ptpn20-201	3153	426aa	ENSMUSP00000022508.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36870	O55082-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226512.2	Ptpn20-202	1467	133aa	ENSMUSP00000153829.2	Nonsense mediated decay		O55082-2	-
ENSMUST00000227887.2	Ptpn20-203	792	43aa	ENSMUSP00000154272.2	Nonsense mediated decay		A0A2I3BQP0	-

Gene: Ptpn20 ENSMUSG00000021940

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Gene: Ptpn20 ENSMUSG00000021940

Summary

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