Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ptar1 ENSMUSG00000074925

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Description

protein prenyltransferase alpha subunit repeat containing 1 [Source:MGI Symbol;Acc:MGI:1921875]

Gene Synonyms

1700084D09Rik, 2010013L17Rik, 4930428J16Rik

Location

Chromosome 19: 23,664,793-23,709,032 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000237333.2	Ptar1-205	12574	424aa	ENSMUSP00000157782.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50405	A0A494B9V8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000067077.2	Ptar1-201	1756	112aa	ENSMUSP00000069426.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8C3P5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000099560.5	Ptar1-202	1722	66aa	ENSMUSP00000097156.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9QAB6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000236951.2	Ptar1-204	601	200aa	ENSMUSP00000158406.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBC8	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000235740.2	Ptar1-203	1283	66aa	ENSMUSP00000157451.2	Nonsense mediated decay		E9QAB6	-

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Summary

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