Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Phenotypes
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Gene: Panct2 ENSMUSG00000097814

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Description

pluripotency-associated noncoding transcript 2 [Source:MGI Symbol;Acc:MGI:3643517]

Gene Synonyms

Gm5101

Location

Chromosome 1: 96,798,851-96,835,521 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 13 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000188631.5	Panct2-202	625	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000181489.4	Panct2-201	3910	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000367070.1	Panct2-204	1808	No protein	-	lncRNA		-
ENSMUST00000367073.1	Panct2-207	1439	No protein	-	lncRNA		-
ENSMUST00000367075.1	Panct2-209	1275	No protein	-	lncRNA		-
ENSMUST00000202118.4	Panct2-203	1251	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000367072.1	Panct2-206	772	No protein	-	lncRNA		-
ENSMUST00000367071.1	Panct2-205	765	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000367077.1	Panct2-211	750	No protein	-	lncRNA		-
ENSMUST00000367076.1	Panct2-210	679	No protein	-	lncRNA		-
ENSMUST00000367078.1	Panct2-212	614	No protein	-	lncRNA		-
ENSMUST00000367079.1	Panct2-213	570	No protein	-	lncRNA		-
ENSMUST00000367074.1	Panct2-208	487	No protein	-	lncRNA		-

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Summary

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