Gene: Otx2os1 ENSMUSG00000098682

Description

orthodenticle homeobox 2 opposite strand 1 [Source:MGI Symbol;Acc:MGI:3583292]

Location

Chromosome 14: 48,906,165-49,109,111 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 55 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000263923.1	Otx2os1-212	1971	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000263926.1	Otx2os1-215	1794	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242522.1	Otx2os1-208	1583	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245229.2	Otx2os1-210	1549	No protein	-	lncRNA	-
ENSMUST00000263948.1	Otx2os1-236	1487	No protein	-	lncRNA	-
ENSMUST00000263928.1	Otx2os1-217	1324	No protein	-	lncRNA	-
ENSMUST00000263954.1	Otx2os1-242	1277	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000183522.9	Otx2os1-201	1196	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000263925.1	Otx2os1-214	1146	No protein	-	lncRNA	-
ENSMUST00000263924.1	Otx2os1-213	1126	No protein	-	lncRNA	-
ENSMUST00000263932.1	Otx2os1-220	1118	No protein	-	lncRNA	-
ENSMUST00000243756.2	Otx2os1-209	1025	No protein	-	lncRNA	-
ENSMUST00000263934.1	Otx2os1-222	1024	No protein	-	lncRNA	-
ENSMUST00000263947.1	Otx2os1-235	1006	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000263964.1	Otx2os1-252	978	No protein	-	lncRNA	-
ENSMUST00000263930.1	Otx2os1-218	976	No protein	-	lncRNA	-
ENSMUST00000263950.1	Otx2os1-238	947	No protein	-	lncRNA	-
ENSMUST00000263931.1	Otx2os1-219	907	No protein	-	lncRNA	-
ENSMUST00000263941.1	Otx2os1-229	878	No protein	-	lncRNA	-
ENSMUST00000263966.1	Otx2os1-254	870	No protein	-	lncRNA	-
ENSMUST00000263933.1	Otx2os1-221	865	No protein	-	lncRNA	-
ENSMUST00000263952.1	Otx2os1-240	864	No protein	-	lncRNA	-
ENSMUST00000263956.1	Otx2os1-244	844	No protein	-	lncRNA	-
ENSMUST00000263937.1	Otx2os1-225	838	No protein	-	lncRNA	-
ENSMUST00000263946.1	Otx2os1-234	820	No protein	-	lncRNA	-
ENSMUST00000246619.2	Otx2os1-211	816	No protein	-	lncRNA	-
ENSMUST00000228153.2	Otx2os1-206	787	No protein	-	lncRNA	-
ENSMUST00000263957.1	Otx2os1-245	775	No protein	-	lncRNA	-
ENSMUST00000263927.1	Otx2os1-216	764	No protein	-	lncRNA	-
ENSMUST00000263936.1	Otx2os1-224	763	No protein	-	lncRNA	-
ENSMUST00000227221.2	Otx2os1-204	751	No protein	-	lncRNA	-
ENSMUST00000228743.2	Otx2os1-207	743	No protein	-	lncRNA	-
ENSMUST00000183803.8	Otx2os1-202	743	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227424.2	Otx2os1-205	695	No protein	-	lncRNA	-
ENSMUST00000263953.1	Otx2os1-241	694	No protein	-	lncRNA	-
ENSMUST00000263949.1	Otx2os1-237	687	No protein	-	lncRNA	-
ENSMUST00000263963.1	Otx2os1-251	663	No protein	-	lncRNA	-
ENSMUST00000184869.3	Otx2os1-203	632	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000263940.1	Otx2os1-228	629	No protein	-	lncRNA	-
ENSMUST00000263942.1	Otx2os1-230	627	No protein	-	lncRNA	-
ENSMUST00000263959.1	Otx2os1-247	626	No protein	-	lncRNA	-
ENSMUST00000263935.1	Otx2os1-223	621	No protein	-	lncRNA	-
ENSMUST00000263951.1	Otx2os1-239	609	No protein	-	lncRNA	-
ENSMUST00000263955.1	Otx2os1-243	583	No protein	-	lncRNA	-
ENSMUST00000263945.1	Otx2os1-233	544	No protein	-	lncRNA	-
ENSMUST00000263960.1	Otx2os1-248	540	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000263967.1	Otx2os1-255	532	No protein	-	lncRNA	-
ENSMUST00000263962.1	Otx2os1-250	519	No protein	-	lncRNA	-
ENSMUST00000263939.1	Otx2os1-227	461	No protein	-	lncRNA	-
ENSMUST00000263944.1	Otx2os1-232	459	No protein	-	lncRNA	-
ENSMUST00000263965.1	Otx2os1-253	448	No protein	-	lncRNA	-
ENSMUST00000263938.1	Otx2os1-226	423	No protein	-	lncRNA	-
ENSMUST00000263943.1	Otx2os1-231	410	No protein	-	lncRNA	-
ENSMUST00000263958.1	Otx2os1-246	404	No protein	-	lncRNA	-
ENSMUST00000263961.1	Otx2os1-249	401	No protein	-	lncRNA	-

Gene: Otx2os1 ENSMUSG00000098682

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Gene: Otx2os1 ENSMUSG00000098682

Summary

About Us

Get help

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