Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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External references
Supporting evidence
ID History
- Gene history

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Gene: Muc16 ENSMUSG00000109564

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Description

mucin 16 [Source:MGI Symbol;Acc:MGI:1920982]

Gene Synonyms

1110008I14Rik, Gm21044, LOC385009

Location

Chromosome 9: 18,406,751-18,585,826 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 4 transcripts (splice variants), 91 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000208663.2	Muc16-204	25437	8478aa	ENSMUSP00000147104.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A140LJ72	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000207857.2	Muc16-203	7700	2566aa	ENSMUSP00000146623.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A140LI05	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000207509.2	Muc16-202	1099	366aa	ENSMUSP00000146740.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A140LIA5	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000034653.7	Muc16-201	1035	258aa	ENSMUSP00000034653.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D1H1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Summary

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