Gene: Zc2hc1a ENSMUSG00000043542

Description

zinc finger, C2HC-type containing 1A [Source:MGI Symbol;Acc:MGI:1914556]

Gene Synonyms

3110050N22Rik, Fam164a

Location

Chromosome 3: 7,568,543-7,618,896 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 3 transcripts (splice variants), 197 orthologues, 3 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000051064.9	Zc2hc1a-201	3292	324aa	ENSMUSP00000054734.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17230	Q8BJH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000193010.2	Zc2hc1a-203	1420	288aa	ENSMUSP00000141497.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BJH1-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000192835.2	Zc2hc1a-202	443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Zc2hc1a ENSMUSG00000043542

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Gene: Zc2hc1a ENSMUSG00000043542

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