Gene: Lncenc1 ENSMUSG00000078952

Description

long non-coding RNA, embryonic stem cells expressed 1 [Source:MGI Symbol;Acc:MGI:3780541]

Gene Synonyms

Gm11019, Gm2373, Lincenc1, Platr18, linc-Enc1

Location

Chromosome 13: 97,571,455-97,652,188 forward strand.

GRCm39:CM001006.3

About this gene

This gene has 17 transcripts (splice variants) and is associated with 22 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000244290.1	Lncenc1-209	2234	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000179324.2	Lncenc1-202	2764	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000109431.10	Lncenc1-201	2726	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000246094.1	Lncenc1-214	2630	No protein	-	lncRNA	-
ENSMUST00000244877.1	Lncenc1-210	2356	No protein	-	lncRNA	-
ENSMUST00000250140.1	Lncenc1-216	2339	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243060.1	Lncenc1-206	2271	No protein	-	lncRNA	-
ENSMUST00000245212.1	Lncenc1-212	1217	No protein	-	lncRNA	-
ENSMUST00000243064.1	Lncenc1-207	1076	No protein	-	lncRNA	-
ENSMUST00000242609.1	Lncenc1-204	1012	No protein	-	lncRNA	-
ENSMUST00000250141.1	Lncenc1-217	768	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244982.1	Lncenc1-211	608	No protein	-	lncRNA	-
ENSMUST00000244070.1	Lncenc1-208	605	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000180371.2	Lncenc1-203	492	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000242928.1	Lncenc1-205	461	No protein	-	lncRNA	-
ENSMUST00000245625.1	Lncenc1-213	460	No protein	-	lncRNA	-
ENSMUST00000250139.1	Lncenc1-215	410	No protein	-	lncRNA	-

Gene: Lncenc1 ENSMUSG00000078952

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Gene: Lncenc1 ENSMUSG00000078952

Summary

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