Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Gene: Gm47469 ENSMUSG00000113047

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Description

predicted gene, 47469 [Source:MGI Symbol;Acc:MGI:6096437]

Location

Chromosome 13: 74,699,443-74,712,385 reverse strand.

GRCm39:CM001006.3

About this gene

This gene has 12 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000242339.2	Gm47469-204	3653	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000222092.3	Gm47469-202	2964	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000376293.1	Gm47469-212	1685	No protein	-	lncRNA		-
ENSMUST00000221408.2	Gm47469-201	1428	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000376286.1	Gm47469-205	965	No protein	-	lncRNA		-
ENSMUST00000376287.1	Gm47469-206	771	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000376290.1	Gm47469-209	740	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000376289.1	Gm47469-208	718	No protein	-	lncRNA		-
ENSMUST00000376288.1	Gm47469-207	594	No protein	-	lncRNA		-
ENSMUST00000376291.1	Gm47469-210	537	No protein	-	lncRNA		-
ENSMUST00000376292.1	Gm47469-211	490	No protein	-	lncRNA		-
ENSMUST00000222245.3	Gm47469-203	380	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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