Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: Gm47438 ENSMUSG00000111947

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Description

predicted gene, 47438 [Source:MGI Symbol;Acc:MGI:6096390]

Location

Chromosome 10: 127,883,188-127,930,612 reverse strand.

GRCm39:CM001003.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000279785.1	Gm47438-203	626	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000217728.3	Gm47438-201	1639	No protein	-	lncRNA		TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000279788.1	Gm47438-206	1234	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279787.1	Gm47438-205	1104	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279789.1	Gm47438-207	1002	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279790.1	Gm47438-208	831	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279784.1	Gm47438-202	535	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279792.1	Gm47438-210	529	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279797.1	Gm47438-215	495	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000279798.1	Gm47438-216	463	No protein	-	lncRNA		-
ENSMUST00000279794.1	Gm47438-212	462	No protein	-	lncRNA		-
ENSMUST00000279795.1	Gm47438-213	458	No protein	-	lncRNA		-
ENSMUST00000279793.1	Gm47438-211	439	No protein	-	lncRNA		-
ENSMUST00000279786.1	Gm47438-204	432	No protein	-	lncRNA		-
ENSMUST00000279791.1	Gm47438-209	427	No protein	-	lncRNA		-
ENSMUST00000279796.1	Gm47438-214	399	No protein	-	lncRNA		-
ENSMUST00000279799.1	Gm47438-217	344	No protein	-	lncRNA		-

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Summary

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