Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: Gm42196 ENSMUSG00000109716

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Description

predicted gene, 42196 [Source:MGI Symbol;Acc:MGI:5625081]

Gene Synonyms

Gm45681

Location

Chromosome 3: 28,230,665-28,266,426 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000313613.1	Gm42196-202	716	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000313615.1	Gm42196-204	885	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000209618.3	Gm42196-201	733	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000313616.1	Gm42196-205	504	No protein	-	lncRNA		-
ENSMUST00000313614.1	Gm42196-203	464	No protein	-	lncRNA		-
ENSMUST00000313617.1	Gm42196-206	458	No protein	-	lncRNA		-
ENSMUST00000313619.1	Gm42196-208	366	No protein	-	lncRNA		-
ENSMUST00000313620.1	Gm42196-209	343	No protein	-	lncRNA		-
ENSMUST00000313618.1	Gm42196-207	341	No protein	-	lncRNA		-

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Summary

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