Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
External references
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ID History
- Gene history

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Gene: Gm40123 ENSMUSG00000105961

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Description

predicted gene, 40123 [Source:MGI Symbol;Acc:MGI:5623008]

Gene Synonyms

Gm42754

Location

Chromosome 3: 108,133,439-108,147,573 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000278661.1	Gm40123-202	647	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000278664.1	Gm40123-205	1335	No protein	-	lncRNA		-
ENSMUST00000278663.1	Gm40123-204	1282	No protein	-	lncRNA		-
ENSMUST00000278662.1	Gm40123-203	1182	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278670.1	Gm40123-211	1146	No protein	-	lncRNA		-
ENSMUST00000198175.2	Gm40123-201	1027	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000278667.1	Gm40123-208	704	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000278668.1	Gm40123-209	565	No protein	-	lncRNA		-
ENSMUST00000278666.1	Gm40123-207	564	No protein	-	lncRNA		-
ENSMUST00000278669.1	Gm40123-210	441	No protein	-	lncRNA		-
ENSMUST00000278665.1	Gm40123-206	335	No protein	-	lncRNA		-

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Summary

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