Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
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ID History
- Gene history

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Gene: Gm39397 ENSMUSG00000110636

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Description

predicted gene, 39397 [Source:MGI Symbol;Acc:MGI:5622282]

Gene Synonyms

Gm45840

Location

Chromosome 11: 103,303,592-103,345,549 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 13 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000310723.1	Gm39397-203	986	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000310733.1	Gm39397-212	640	No protein	-	lncRNA		-
ENSMUST00000212331.4	Gm39397-201	564	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000310732.1	Gm39397-211	533	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000310724.1	Gm39397-204	523	No protein	-	lncRNA		-
ENSMUST00000310731.1	Gm39397-210	517	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000310728.1	Gm39397-208	469	No protein	-	lncRNA		-
ENSMUST00000245584.2	Gm39397-202	436	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000310727.1	Gm39397-207	427	No protein	-	lncRNA		-
ENSMUST00000310725.1	Gm39397-205	396	No protein	-	lncRNA		-
ENSMUST00000310734.1	Gm39397-213	376	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000310730.1	Gm39397-209	353	No protein	-	lncRNA		-
ENSMUST00000310726.1	Gm39397-206	268	No protein	-	lncRNA		-

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Summary

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