Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: Gm16638 ENSMUSG00000087088

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Description

predicted gene, 16638 [Source:MGI Symbol;Acc:MGI:4439562]

Location

Chromosome 7: 83,246,169-83,281,112 reverse strand.

GRCm39:CM001000.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000247392.1	Gm16638-204	1867	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000208892.2	Gm16638-202	8508	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000361493.1	Gm16638-205	2155	No protein	-	lncRNA		-
ENSMUST00000148687.2	Gm16638-201	1865	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000361494.1	Gm16638-206	1853	No protein	-	lncRNA		-
ENSMUST00000242657.2	Gm16638-203	1286	No protein	-	lncRNA		-
ENSMUST00000361495.1	Gm16638-207	862	No protein	-	lncRNA		-
ENSMUST00000361498.1	Gm16638-210	783	No protein	-	lncRNA		-
ENSMUST00000361496.1	Gm16638-208	777	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000361497.1	Gm16638-209	700	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000361499.1	Gm16638-211	567	No protein	-	lncRNA		-
ENSMUST00000361500.1	Gm16638-212	373	No protein	-	lncRNA		-

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Summary

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