Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: Gm47708 ENSMUSG00000112188

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Description

predicted gene, 47708 [Source:MGI Symbol;Acc:MGI:6096827]

Location

Chromosome 10: 95,513,520-95,575,230 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000352590.1	Gm47708-203	465	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000352597.1	Gm47708-210	856	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000219583.3	Gm47708-202	724	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000218485.3	Gm47708-201	643	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000352594.1	Gm47708-207	636	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352595.1	Gm47708-208	633	No protein	-	lncRNA		-
ENSMUST00000352603.1	Gm47708-216	595	No protein	-	lncRNA		-
ENSMUST00000352600.1	Gm47708-213	564	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352591.1	Gm47708-204	531	No protein	-	lncRNA		-
ENSMUST00000352596.1	Gm47708-209	500	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352593.1	Gm47708-206	497	No protein	-	lncRNA		-
ENSMUST00000352602.1	Gm47708-215	481	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000352599.1	Gm47708-212	450	No protein	-	lncRNA		-
ENSMUST00000352601.1	Gm47708-214	431	No protein	-	lncRNA		-
ENSMUST00000352598.1	Gm47708-211	395	No protein	-	lncRNA		-
ENSMUST00000352592.1	Gm47708-205	385	No protein	-	lncRNA		-
ENSMUST00000352604.1	Gm47708-217	339	No protein	-	lncRNA		-

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Summary

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