Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
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Phenotypes
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Gene: Gm20646 ENSMUSG00000093436

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Description

predicted gene 20646 [Source:MGI Symbol;Acc:MGI:5313093]

Gene Synonyms

Gm46091

Location

Chromosome 1: 42,723,408-42,783,959 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 12 transcripts (splice variants) and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000294523.1	Gm20646-203	1519	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000294526.1	Gm20646-206	1569	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000294525.1	Gm20646-205	1420	No protein	-	lncRNA		-
ENSMUST00000176807.3	Gm20646-201	1316	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000294524.1	Gm20646-204	1225	No protein	-	lncRNA		-
ENSMUST00000294528.1	Gm20646-208	1085	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000294527.1	Gm20646-207	1053	No protein	-	lncRNA		-
ENSMUST00000294529.1	Gm20646-209	829	No protein	-	lncRNA		-
ENSMUST00000294530.1	Gm20646-210	760	No protein	-	lncRNA		-
ENSMUST00000294532.1	Gm20646-212	668	No protein	-	lncRNA		-
ENSMUST00000199521.5	Gm20646-202	660	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000294531.1	Gm20646-211	371	No protein	-	lncRNA		-

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Summary

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