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- Splice variants
- Transcript comparison
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Gene: 1700007J10Rik ENSMUSG00000086330

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Description

RIKEN cDNA 1700007J10 gene [Source:MGI Symbol;Acc:MGI:1916570]

Location

Chromosome 11: 59,616,646-59,630,987 reverse strand.

GRCm39:CM001004.3

About this gene

This gene has 13 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000278914.1	1700007J10Rik-204	1129	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000278915.1	1700007J10Rik-205	1308	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000153431.3	1700007J10Rik-202	1120	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000278917.1	1700007J10Rik-207	952	No protein	-	lncRNA		-
ENSMUST00000278920.1	1700007J10Rik-210	944	No protein	-	lncRNA		-
ENSMUST00000278913.1	1700007J10Rik-203	879	No protein	-	lncRNA		-
ENSMUST00000139530.9	1700007J10Rik-201	781	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000278918.1	1700007J10Rik-208	781	No protein	-	lncRNA		-
ENSMUST00000278921.1	1700007J10Rik-211	738	No protein	-	lncRNA		-
ENSMUST00000278922.1	1700007J10Rik-212	676	No protein	-	lncRNA		-
ENSMUST00000278919.1	1700007J10Rik-209	603	No protein	-	lncRNA		-
ENSMUST00000278916.1	1700007J10Rik-206	555	No protein	-	lncRNA		-
ENSMUST00000278923.1	1700007J10Rik-213	392	No protein	-	lncRNA		-

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Summary

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