Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: 2210406O10Rik ENSMUSG00000039563

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Description

RIKEN cDNA 2210406O10 gene [Source:MGI Symbol;Acc:MGI:1923960]

Location

Chromosome 5: 36,604,951-36,622,882 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000362058.1	2210406O10Rik-204	677	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000362061.1	2210406O10Rik-207	1937	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000362062.1	2210406O10Rik-208	1855	No protein	-	lncRNA		-
ENSMUST00000122882.3	2210406O10Rik-201	1827	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000362059.1	2210406O10Rik-205	1458	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000362060.1	2210406O10Rik-206	1380	No protein	-	lncRNA		-
ENSMUST00000149687.2	2210406O10Rik-202	1198	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000362064.1	2210406O10Rik-210	1192	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000362063.1	2210406O10Rik-209	1121	No protein	-	lncRNA		-
ENSMUST00000362065.1	2210406O10Rik-211	933	No protein	-	lncRNA		-
ENSMUST00000362068.1	2210406O10Rik-214	894	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000362067.1	2210406O10Rik-213	890	No protein	-	lncRNA		-
ENSMUST00000151434.3	2210406O10Rik-203	874	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000362069.1	2210406O10Rik-215	851	No protein	-	lncRNA		-
ENSMUST00000362070.1	2210406O10Rik-216	423	No protein	-	lncRNA		-
ENSMUST00000362066.1	2210406O10Rik-212	416	No protein	-	lncRNA		-

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Summary

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