Gene: Vps13b ENSMUSG00000037646

Description

vacuolar protein sorting 13B [Source:MGI Symbol;Acc:MGI:1916380]

Gene Synonyms

1810042B05Rik, 2310042E16Rik, C330002D13Rik, Coh1

Location

Chromosome 15: 35,371,306-35,931,375 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 7 transcripts (splice variants), 214 orthologues and is associated with 72 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000048646.9	Vps13b-201	13757	3993aa	ENSMUSP00000045490.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49592	Q80TY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000227455.2	Vps13b-204	339	46aa	ENSMUSP00000153856.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPN3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226579.2	Vps13b-202	4568	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000228738.2	Vps13b-207	4254	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227567.2	Vps13b-205	2634	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000228338.2	Vps13b-206	2076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227309.2	Vps13b-203	1539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Vps13b ENSMUSG00000037646

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Gene: Vps13b ENSMUSG00000037646

Summary

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