Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Pfdn1 ENSMUSG00000024346

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Description

prefoldin 1 [Source:MGI Symbol;Acc:MGI:1914449]

Gene Synonyms

2700086I23Rik

Location

Chromosome 18: 36,536,729-36,587,577 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 3 transcripts (splice variants), 214 orthologues and is associated with 49 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025204.7	Pfdn1-201	1109	122aa	ENSMUSP00000025204.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29152	Q9CQF7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237792.2	Pfdn1-203	1024	87aa	ENSMUSP00000158562.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBK3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000237499.2	Pfdn1-202	485	104aa	ENSMUSP00000158027.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAH5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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