Gene: Depdc1a ENSMUSG00000028175

Description

DEP domain containing 1a [Source:MGI Symbol;Acc:MGI:1923381]

Gene Synonyms

5830484J08Rik

Location

Chromosome 3: 159,201,070-159,235,592 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 3 transcripts (splice variants), 217 orthologues, 2 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000120272.8	Depdc1a-203	3323	806aa	ENSMUSP00000113216.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51105	D3Z6J1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000029825.14	Depdc1a-201	2920	804aa	ENSMUSP00000029825.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17936	Q8CIG0-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000106041.3	Depdc1a-202	1971	529aa	ENSMUSP00000101656.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51106	Q8CIG0-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Depdc1a ENSMUSG00000028175

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Gene: Depdc1a ENSMUSG00000028175

Summary

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