Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cyth4 ENSMUSG00000018008

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Description

cytohesin 4 [Source:MGI Symbol;Acc:MGI:2441702]

Gene Synonyms

2510004M07Rik, 5830469K17Rik, Pscd4

Location

Chromosome 15: 78,481,247-78,506,219 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 13 transcripts (splice variants), 273 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000043069.6	Cyth4-201	2791	393aa	ENSMUSP00000042698.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27620	Q3U0C0 Q80YW0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231180.2	Cyth4-213	813	56aa	ENSMUSP00000154995.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHE0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000229295.2	Cyth4-205	381	66aa	ENSMUSP00000155432.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VKE8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229796.2	Cyth4-207	364	60aa	ENSMUSP00000155451.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHU9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229248.2	Cyth4-203	2590	66aa	ENSMUSP00000155708.2	Nonsense mediated decay		A0A2R8W712	-
ENSMUST00000231168.2	Cyth4-211	1627	184aa	ENSMUSP00000155690.2	Nonsense mediated decay		A0A2R8VI37	-
ENSMUST00000229717.2	Cyth4-206	634	54aa	ENSMUSP00000155352.2	Nonsense mediated decay		A0A2R8VKC6	-
ENSMUST00000229256.2	Cyth4-204	367	39aa	ENSMUSP00000155122.2	Nonsense mediated decay		A0A2R8VK10	-
ENSMUST00000231176.2	Cyth4-212	3110	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000230705.2	Cyth4-210	803	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000230583.2	Cyth4-209	1223	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230041.2	Cyth4-208	396	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229233.2	Cyth4-202	199	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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