Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
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Ontologies
Phenotypes
Genetic Variation
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ID History
- Gene history

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Gene: Cyc1 ENSMUSG00000022551

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Description

cytochrome c-1 [Source:MGI Symbol;Acc:MGI:1913695]

Gene Synonyms

2610002H19Rik, Cyct1

Location

Chromosome 15: 76,227,723-76,230,460 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 7 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023210.8	Cyc1-201	1520	325aa	ENSMUSP00000023210.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27567	Q9D0M3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231045.2	Cyc1-207	716	165aa	ENSMUSP00000155170.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHK1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230706.2	Cyc1-206	360	30aa	ENSMUSP00000155129.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VK14	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229013.2	Cyc1-202	737	92aa	ENSMUSP00000155655.2	Nonsense mediated decay		A0A2R8VI32	-
ENSMUST00000229292.2	Cyc1-203	563	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000229710.2	Cyc1-204	1791	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000229946.2	Cyc1-205	771	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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