Gene: Ccdc154 ENSMUSG00000059562

Description

coiled-coil domain containing 154 [Source:MGI Symbol;Acc:MGI:2685163]

Gene Synonyms

LOC207209, ntl

Location

Chromosome 17: 25,381,435-25,390,887 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 4 transcripts (splice variants), 80 orthologues and is associated with 14 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000073277.12	Ccdc154-201	2417	657aa	ENSMUSP00000073002.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A570Y9P0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000182621.8	Ccdc154-203	2402	664aa	ENSMUSP00000138090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50032	Q6RUT8-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000182292.2	Ccdc154-202	1989	662aa	ENSMUSP00000138191.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		S4R1F0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000183178.8	Ccdc154-204	2523	82aa	ENSMUSP00000138659.2	Nonsense mediated decay		S4R2I6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Ccdc154 ENSMUSG00000059562

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Gene: Ccdc154 ENSMUSG00000059562

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