Gene: Best1 ENSMUSG00000037418

Description

bestrophin 1 [Source:MGI Symbol;Acc:MGI:1346332]

Gene Synonyms

Vmd2, best macular dystrophy, mBest1

Location

Chromosome 19: 9,962,538-9,978,997 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 3 transcripts (splice variants), 209 orthologues, 2 paralogues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000117346.2	Best1-201	2080	551aa	ENSMUSP00000113053.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29568	O88870	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000235983.2	Best1-203	1725	420aa	ENSMUSP00000157419.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B8Z9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000144273.2	Best1-202	301	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Gene: Best1 ENSMUSG00000037418

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Gene: Best1 ENSMUSG00000037418

Summary

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