Gene: Bbof1 ENSMUSG00000057265

Description

basal body orientation factor 1 [Source:MGI Symbol;Acc:MGI:1920123]

Gene Synonyms

2900006K08Rik, Ccdc176

Location

Chromosome 12: 84,455,845-84,489,661 forward strand.

GRCm39:CM001005.3

About this gene

This gene has 4 transcripts (splice variants), 193 orthologues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000081828.13	Bbof1-201	2187	533aa	ENSMUSP00000080512.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36492	Q3V079	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000221969.2	Bbof1-204	2138	46aa	ENSMUSP00000152383.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1Y7VJB4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000151789.8	Bbof1-202	441	147aa	ENSMUSP00000115708.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6SSU6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000153540.2	Bbof1-203	636	108aa	ENSMUSP00000114625.2	Nonsense mediated decay		F7A549	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Gene: Bbof1 ENSMUSG00000057265

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Bbof1 ENSMUSG00000057265

Summary

About Us

Get help

Our sister sites

Follow us