Summary
- Splice variants
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Gene: A630095N17Rik ENSMUSG00000096094

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Description

RIKEN cDNA A630095N17 gene [Source:MGI Symbol;Acc:MGI:2686470]

Gene Synonyms

LOC381272

Location

Chromosome 1: 75,196,739-75,208,746 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 3 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000180101.3	A630095N17Rik-202	571	116aa	ENSMUSP00000135937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56634	J3KMM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000179573.2	A630095N17Rik-201	648	78aa	ENSMUSP00000136333.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56633	J3QMK5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000191271.2	A630095N17Rik-203	475	51aa	ENSMUSP00000140071.2	Nonsense mediated decay		A0A087WQ76	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Summary

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