Summary
- Splice variants
- Transcript comparison
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Gene: 9530020I12Rik ENSMUSG00000112041

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Description

RIKEN cDNA 9530020I12 gene [Source:MGI Symbol;Acc:MGI:1924692]

Location

Chromosome 12: 11,235,994-11,272,418 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000336067.1	9530020I12Rik-204	604	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000218368.3	9530020I12Rik-202	1331	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000336068.1	9530020I12Rik-205	1328	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336069.1	9530020I12Rik-206	1221	No protein	-	lncRNA		-
ENSMUST00000336075.1	9530020I12Rik-212	992	No protein	-	lncRNA		-
ENSMUST00000336074.1	9530020I12Rik-211	985	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336070.1	9530020I12Rik-207	968	No protein	-	lncRNA		-
ENSMUST00000218277.2	9530020I12Rik-201	884	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000336072.1	9530020I12Rik-209	822	No protein	-	lncRNA		-
ENSMUST00000219371.2	9530020I12Rik-203	819	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000336071.1	9530020I12Rik-208	790	No protein	-	lncRNA		-
ENSMUST00000336077.1	9530020I12Rik-214	715	No protein	-	lncRNA		-
ENSMUST00000336079.1	9530020I12Rik-216	560	No protein	-	lncRNA		-
ENSMUST00000336073.1	9530020I12Rik-210	541	No protein	-	lncRNA		-
ENSMUST00000336076.1	9530020I12Rik-213	522	No protein	-	lncRNA		-
ENSMUST00000336078.1	9530020I12Rik-215	327	No protein	-	lncRNA		-

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Summary

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