Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: 9230020A06Rik ENSMUSG00000072753

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Description

RIKEN cDNA 9230020A06 gene [Source:MGI Symbol;Acc:MGI:3588244]

Location

Chromosome 11: 71,403,173-71,464,009 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 13 transcripts (splice variants) and 3 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000151841.8	9230020A06Rik-201	2051	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000214621.2	9230020A06Rik-203	1682	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000310085.1	9230020A06Rik-209	1456	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000215201.2	9230020A06Rik-204	1116	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000310087.1	9230020A06Rik-211	906	No protein	-	lncRNA		-
ENSMUST00000310081.1	9230020A06Rik-205	879	No protein	-	lncRNA		-
ENSMUST00000310083.1	9230020A06Rik-207	748	No protein	-	lncRNA		-
ENSMUST00000310084.1	9230020A06Rik-208	667	No protein	-	lncRNA		-
ENSMUST00000310082.1	9230020A06Rik-206	587	No protein	-	lncRNA		-
ENSMUST00000171420.3	9230020A06Rik-202	582	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000310086.1	9230020A06Rik-210	563	No protein	-	lncRNA		-
ENSMUST00000310089.1	9230020A06Rik-213	485	No protein	-	lncRNA		-
ENSMUST00000310088.1	9230020A06Rik-212	453	No protein	-	lncRNA		-

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Summary

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