Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: 5730403I07Rik ENSMUSG00000099170

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Description

RIKEN cDNA 5730403I07 gene [Source:MGI Symbol;Acc:MGI:1917737]

Location

Chromosome 9: 77,273,694-77,327,657 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 14 transcripts (splice variants) and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000354219.1	5730403I07Rik-202	805	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000183878.3	5730403I07Rik-201	2197	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000354225.1	5730403I07Rik-208	1396	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354220.1	5730403I07Rik-203	838	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354223.1	5730403I07Rik-206	706	No protein	-	lncRNA		-
ENSMUST00000354231.1	5730403I07Rik-214	687	No protein	-	lncRNA		-
ENSMUST00000354230.1	5730403I07Rik-213	680	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354221.1	5730403I07Rik-204	676	No protein	-	lncRNA		-
ENSMUST00000354222.1	5730403I07Rik-205	631	No protein	-	lncRNA		-
ENSMUST00000354224.1	5730403I07Rik-207	626	No protein	-	lncRNA		-
ENSMUST00000354227.1	5730403I07Rik-210	562	No protein	-	lncRNA		-
ENSMUST00000354229.1	5730403I07Rik-212	522	No protein	-	lncRNA		-
ENSMUST00000354228.1	5730403I07Rik-211	489	No protein	-	lncRNA		-
ENSMUST00000354226.1	5730403I07Rik-209	482	No protein	-	lncRNA		-

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Summary

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