Summary
- Splice variants
- Transcript comparison
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Gene: 4933409G03Rik ENSMUSG00000053896

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Description

RIKEN cDNA 4933409G03 gene [Source:MGI Symbol;Acc:MGI:3045336]

Location

Chromosome 2: 68,412,757-68,446,807 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 2 transcripts (splice variants) and 4 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000102713.11	4933409G03Rik-201	1339	320aa	ENSMUSP00000099774.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16085	Q8C5U0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000137117.2	4933409G03Rik-202	587	196aa	ENSMUSP00000117165.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6YRC2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

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Summary

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