Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: 3110045C21Rik ENSMUSG00000097503

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Description

RIKEN cDNA 3110045C21 gene [Source:MGI Symbol;Acc:MGI:1914553]

Location

Chromosome 1: 169,796,915-169,800,517 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 14 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000180638.5	3110045C21Rik-201	1749	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242751.2	3110045C21Rik-205	2164	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272790.1	3110045C21Rik-212	2009	No protein	-	lncRNA		-
ENSMUST00000243049.1	3110045C21Rik-206	1634	No protein	-	lncRNA		-
ENSMUST00000242643.2	3110045C21Rik-203	1393	No protein	-	lncRNA		-
ENSMUST00000242743.2	3110045C21Rik-204	1370	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272786.1	3110045C21Rik-208	1250	No protein	-	lncRNA		-
ENSMUST00000272787.1	3110045C21Rik-209	1191	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272789.1	3110045C21Rik-211	1152	No protein	-	lncRNA		-
ENSMUST00000193930.4	3110045C21Rik-202	1138	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000272792.1	3110045C21Rik-214	963	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000272788.1	3110045C21Rik-210	892	No protein	-	lncRNA		-
ENSMUST00000246531.1	3110045C21Rik-207	794	No protein	-	lncRNA		-
ENSMUST00000272791.1	3110045C21Rik-213	718	No protein	-	lncRNA		-

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Summary

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