Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: 1700112J05Rik ENSMUSG00000086632

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Description

RIKEN cDNA 1700112J05 gene [Source:MGI Symbol;Acc:MGI:3696786]

Location

Chromosome 5: 77,150,660-77,166,723 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000342397.1	1700112J05Rik-202	1261	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000342398.1	1700112J05Rik-203	1267	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000342402.1	1700112J05Rik-207	1161	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000342405.1	1700112J05Rik-210	985	No protein	-	lncRNA		-
ENSMUST00000129353.3	1700112J05Rik-201	819	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000342401.1	1700112J05Rik-206	812	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000342409.1	1700112J05Rik-214	763	No protein	-	lncRNA		-
ENSMUST00000342406.1	1700112J05Rik-211	687	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000342404.1	1700112J05Rik-209	660	No protein	-	lncRNA		-
ENSMUST00000342403.1	1700112J05Rik-208	643	No protein	-	lncRNA		-
ENSMUST00000342399.1	1700112J05Rik-204	601	No protein	-	lncRNA		-
ENSMUST00000342400.1	1700112J05Rik-205	583	No protein	-	lncRNA		-
ENSMUST00000342407.1	1700112J05Rik-212	493	No protein	-	lncRNA		-
ENSMUST00000342408.1	1700112J05Rik-213	493	No protein	-	lncRNA		-
ENSMUST00000342410.1	1700112J05Rik-215	305	No protein	-	lncRNA		-

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Summary

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