Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: 1700069L16Rik ENSMUSG00000042184

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Description

RIKEN cDNA 1700069L16 gene [Source:MGI Symbol;Acc:MGI:1920726]

Location

Chromosome 5: 113,822,717-113,862,890 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 16 transcripts (splice variants) and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000316635.1	1700069L16Rik-204	631	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000316637.1	1700069L16Rik-206	1714	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000316639.1	1700069L16Rik-208	981	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000162388.9	1700069L16Rik-203	911	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000316640.1	1700069L16Rik-209	884	No protein	-	lncRNA		-
ENSMUST00000316643.1	1700069L16Rik-212	759	No protein	-	lncRNA		-
ENSMUST00000316642.1	1700069L16Rik-211	746	No protein	-	lncRNA		-
ENSMUST00000316645.1	1700069L16Rik-214	684	No protein	-	lncRNA		-
ENSMUST00000316646.1	1700069L16Rik-215	675	No protein	-	lncRNA		-
ENSMUST00000316647.1	1700069L16Rik-216	649	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000316641.1	1700069L16Rik-210	648	No protein	-	lncRNA		-
ENSMUST00000159233.2	1700069L16Rik-202	613	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000047891.7	1700069L16Rik-201	600	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000316638.1	1700069L16Rik-207	579	No protein	-	lncRNA		-
ENSMUST00000316636.1	1700069L16Rik-205	543	No protein	-	lncRNA		-
ENSMUST00000316644.1	1700069L16Rik-213	502	No protein	-	lncRNA		-

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Summary

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